Sim Agent MPI

Sim Agent MPI is an easy to use tool that takes the difficulty of running Neuron HOC code or MPI/sbatch based jobs on supercomputers.

It currently supports connections to the NSG-R API and connections using SSH to servers running Slurm.

Screenshot

 

Windows Download

Release

Version

Link

v1.3 (easy auto installer)

 

Parameter Sweep Included

Newest Version

 

Windows-64 bit

Download

v1.2 (with updater)

 

Old zip folder only, with exe

 

Windows 64-bit

Download

 

Youtube videos [Part 1] [Part 2]

 

Linux and Mac Users

To obtain SimAgent execute the following commands from your python environment:

 

$

$

$

$

$

git clone https://github.com/tjbanks/SimAgentMPI

cd SimAgentMPI

git checkout linux

pip install -r requirements.txt

 

 

To use SimAgent any time after simply call

$

$

python SimAgentMPI.py

 

 

For a good python environment install Anaconda - https://www.anaconda.com/distribution/

To install git on mac see https://www.macworld.co.uk/how-to/mac-software/how-use-git-github-on-your-mac-3639136/

 

Additional

Source and documentation is also available at https://github.com/tjbanks/SimAgentMPI

Built using Anaconda.

 

 

 

Developed by Tyler Banks at The University of Missouri for Professor Nair's Neural Engineering Laboratory.

Copyright 2018 where applicable